PH01002049G0060's details annotation
1.Annotation
ICBR annotation: decarboxylase, putative, expressed
Blast result AT1G43710 : 0.00E+00
Blast annotation: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
2.Location
Scaffold: PH01002049
Strand: -
| Region | Start | End |
| gene | 27089 | 30820 |
| mRNA | 27089 | 30820 |
| exon | 27089 | 28631 |
| exon | 28740 | 28873 |
| exon | 28954 | 29147 |
| exon | 29250 | 29481 |
| exon | 30445 | 30820 |
| CDS | 28062 | 28631 |
| CDS | 28740 | 28873 |
| CDS | 28954 | 29147 |
| CDS | 29250 | 29481 |
| CDS | 30445 | 30505 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00282.18 | Pyridoxal_deC | 106 | 316 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Histidine metabolism | histidine decarboxylase [EC:4.1.1.22] | ko00340 | K01590 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0016831 | carboxy-lyase activity |
| GO:0019752 | carboxylic acid metabolic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.