PH01002057G0270's details annotation
1.Annotation
ICBR annotation: enoyl-CoA hydratase/isomerase family protein, putative, expressed
Blast result AT5G65940 : 9.00E-141
Blast annotation: beta-hydroxyisobutyryl-CoA hydrolase 1
2.Location
Scaffold: PH01002057
Strand: -
| Region | Start | End |
| gene | 184953 | 191555 |
| mRNA | 184953 | 191555 |
| exon | 184953 | 185204 |
| exon | 185308 | 185349 |
| exon | 185423 | 185524 |
| exon | 186211 | 186309 |
| exon | 186390 | 186450 |
| exon | 187143 | 187264 |
| exon | 187559 | 187644 |
| exon | 188340 | 188424 |
| exon | 188903 | 188986 |
| exon | 189074 | 189153 |
| exon | 189340 | 189493 |
| exon | 189930 | 189998 |
| exon | 190112 | 190270 |
| exon | 191020 | 191555 |
| CDS | 185067 | 185204 |
| CDS | 185308 | 185349 |
| CDS | 185423 | 185524 |
| CDS | 186211 | 186309 |
| CDS | 186390 | 186450 |
| CDS | 187143 | 187264 |
| CDS | 187559 | 187644 |
| CDS | 188340 | 188424 |
| CDS | 188903 | 188986 |
| CDS | 189074 | 189153 |
| CDS | 189340 | 189493 |
| CDS | 189930 | 189998 |
| CDS | 190112 | 190270 |
| CDS | 191020 | 191067 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000810 | CAMTA Transcription_Regulator(from PlantTFDB) glycerol-3-phosphate dehydrogenase complex, Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16113.4 | ECH_2 | 26 | 359 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Propanoate metabolism | 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] | ko00640 | K05605 |
| 298 Valine, leucine and isoleucine degradation | 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] | K05605 | |
| beta-Alanine metabolism | 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] | ko00410 | K05605 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.