PH01002058G0270's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G57410 : 5.00E-141
Blast annotation: Afadin/alpha-actinin-binding protein
2.Location
Scaffold: PH01002058
Strand: +
| Region | Start | End |
| gene | 203986 | 212404 |
| mRNA | 203986 | 212404 |
| exon | 203986 | 205681 |
| exon | 205788 | 205980 |
| exon | 206404 | 206501 |
| exon | 208699 | 208795 |
| exon | 208868 | 208957 |
| exon | 209101 | 209163 |
| exon | 209274 | 209351 |
| exon | 209452 | 209517 |
| exon | 209590 | 209667 |
| exon | 210015 | 210125 |
| exon | 210357 | 210434 |
| exon | 210551 | 210670 |
| exon | 211997 | 212404 |
| CDS | 205677 | 205681 |
| CDS | 205788 | 205980 |
| CDS | 206404 | 206501 |
| CDS | 208699 | 208795 |
| CDS | 208868 | 208957 |
| CDS | 209101 | 209163 |
| CDS | 209274 | 209351 |
| CDS | 209452 | 209517 |
| CDS | 209590 | 209667 |
| CDS | 210015 | 210125 |
| CDS | 210357 | 210434 |
| CDS | 210551 | 210670 |
| CDS | 211997 | 212236 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000504 | cytoplasm, microtubule associated complex, Pyruvate_metabolism Fatty_acid_biosynthesis Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11559.7 | ADIP C | 16 | 187 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.