PH01002059G0100's details annotation
1.Annotation
ICBR annotation: villin protein, putative, expressed
Blast result AT4G30160 : 0.00E+00
Blast annotation: villin 4
2.Location
Scaffold: PH01002059
Strand: -
| Region | Start | End |
| gene | 41220 | 52257 |
| mRNA | 41220 | 52257 |
| exon | 41220 | 42559 |
| exon | 42636 | 42865 |
| exon | 42951 | 43272 |
| exon | 43565 | 43675 |
| exon | 43758 | 43823 |
| exon | 43915 | 44040 |
| exon | 44146 | 44286 |
| exon | 44372 | 44382 |
| exon | 44498 | 44645 |
| exon | 45744 | 45872 |
| exon | 45994 | 46131 |
| exon | 46247 | 46315 |
| exon | 46398 | 46466 |
| exon | 46964 | 47119 |
| exon | 47291 | 47391 |
| exon | 47475 | 47622 |
| exon | 48149 | 48311 |
| exon | 48455 | 48587 |
| exon | 48674 | 48851 |
| exon | 48997 | 49188 |
| exon | 49282 | 49350 |
| exon | 49723 | 49842 |
| exon | 50519 | 50602 |
| exon | 51799 | 52257 |
| CDS | 42446 | 42559 |
| CDS | 42636 | 42865 |
| CDS | 42951 | 43272 |
| CDS | 43565 | 43675 |
| CDS | 43758 | 43823 |
| CDS | 43915 | 44040 |
| CDS | 44146 | 44286 |
| CDS | 44372 | 44382 |
| CDS | 44498 | 44645 |
| CDS | 45744 | 45872 |
| CDS | 45994 | 46131 |
| CDS | 46247 | 46315 |
| CDS | 46398 | 46466 |
| CDS | 46964 | 47119 |
| CDS | 47291 | 47391 |
| CDS | 47475 | 47622 |
| CDS | 48149 | 48311 |
| CDS | 48455 | 48587 |
| CDS | 48674 | 48851 |
| CDS | 48997 | 49188 |
| CDS | 49282 | 49350 |
| CDS | 49723 | 49842 |
| CDS | 50519 | 50602 |
| CDS | 51799 | 51825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00626.21 | Gelsolin | 56 | 136 |
| PF00626.21 | Gelsolin | 162 | 227 |
| PF00626.21 | Gelsolin | 277 | 347 |
| PF00626.21 | Gelsolin | 424 | 492 |
| PF00626.21 | Gelsolin | 543 | 584 |
| PF00626.21 | Gelsolin | 651 | 722 |
| PF02209.18 | VHP | 979 | 1014 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003779 | actin binding |
| GO:0007010 | cytoskeleton organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.