PH01002065G0290's details annotation
1.Annotation
ICBR annotation: START domain containing protein, putative, expressed
Blast result AT4G14500 : 3.70E-88
Blast annotation: Polyketide cyclase/dehydrase and lipid transport superfamily protein
2.Location
Scaffold: PH01002065
Strand: +
| Region | Start | End |
| gene | 238354 | 243361 |
| mRNA | 238354 | 243361 |
| exon | 238354 | 241133 |
| exon | 242148 | 242307 |
| exon | 242731 | 242907 |
| exon | 242984 | 243361 |
| CDS | 240760 | 241133 |
| CDS | 242148 | 242307 |
| CDS | 242731 | 242907 |
| CDS | 242984 | 243109 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001313 | spliceosomal complex, aminopeptidase activity, ubiquitin thiolesterase activity, nuclear mRNA splicing, via spliceosome, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01852.18 | START | 143 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.