Annotation of co-expression genes

PH01002101G0340's details annotation

1.Annotation

ICBR annotation: RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed

Blast result AT2G06510 : 0.00E+00
Blast annotation: replication protein A 1A

2.Location

Scaffold: PH01002101
Strand: -

RegionStartEnd
gene200228203601
mRNA200228203601
exon200228202075
exon203279203601
CDS200392202075
CDS203279203562

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04057.11Rep-A_N7107
PF01336.24tRNA_anti-codon224306
PF16900.4REPA_OB_2333437
PF08646.9Rep_fac-A_C495644

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
DNA replicationreplication factor A1ko03030K07466
Nucleotide excision repairreplication factor A1ko03420K07466
Mismatch repairreplication factor A1ko03430K07466
Homologous recombinationreplication factor A1ko03440K07466

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0005634nucleus
GO:0006260DNA replication

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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