PH01002108G0260's details annotation
1.Annotation
ICBR annotation: late embryogenesis abundant protein, putative, expressed
Blast result AT2G44060 : 3.00E-115
Blast annotation: Late embryogenesis abundant protein, group 2
2.Location
Scaffold: PH01002108
Strand: +
| Region | Start | End |
| gene | 190400 | 194627 |
| mRNA | 190400 | 194627 |
| exon | 190400 | 191251 |
| exon | 191705 | 192624 |
| exon | 194193 | 194627 |
| CDS | 191137 | 191251 |
| CDS | 191705 | 192624 |
| CDS | 194193 | 194198 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03168.12 | LEA_2 | 110 | 205 |
| PF03168.12 | LEA_2 | 236 | 330 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009269 | response to desiccation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.