PH01002119G0170's details annotation
1.Annotation
ICBR annotation: aberrant root formation protein 4, putative, expressed
Blast result AT5G11030 : 5.00E-95
Blast annotation: aberrant lateral root formation 4
2.Location
Scaffold: PH01002119
Strand: -
| Region | Start | End |
| gene | 147065 | 156359 |
| mRNA | 147065 | 156359 |
| exon | 147065 | 147886 |
| exon | 148104 | 148381 |
| exon | 148544 | 148750 |
| exon | 149567 | 149618 |
| exon | 151066 | 151263 |
| exon | 151522 | 151599 |
| exon | 152019 | 152287 |
| exon | 152366 | 152425 |
| exon | 152569 | 152683 |
| exon | 152796 | 152855 |
| exon | 152971 | 153149 |
| exon | 153465 | 153534 |
| exon | 154259 | 154408 |
| exon | 154511 | 154711 |
| exon | 154799 | 156359 |
| CDS | 147719 | 147886 |
| CDS | 148104 | 148381 |
| CDS | 148544 | 148750 |
| CDS | 149567 | 149618 |
| CDS | 151066 | 151263 |
| CDS | 151522 | 151599 |
| CDS | 152019 | 152287 |
| CDS | 152366 | 152425 |
| CDS | 152569 | 152683 |
| CDS | 152796 | 152855 |
| CDS | 152971 | 153149 |
| CDS | 153465 | 153534 |
| CDS | 154259 | 154408 |
| CDS | 154511 | 154711 |
| CDS | 154799 | 154906 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000466 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08568.9 | Kinetochor_Ybp2 | 84 | 211 |
| PF08568.9 | Kinetochor_Ybp2 | 404 | 559 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.