PH01002122G0060's details annotation
1.Annotation
ICBR annotation: XH domain containing protein, expressed
Blast result AT1G15910 : 1.30E-28
Blast annotation: XH/XS domain-containing protein
2.Location
Scaffold: PH01002122
Strand: -
| Region | Start | End |
| gene | 36848 | 43233 |
| mRNA | 36848 | 43233 |
| exon | 36848 | 38623 |
| exon | 39390 | 39634 |
| exon | 39735 | 39947 |
| exon | 40067 | 40246 |
| exon | 40871 | 40995 |
| exon | 41333 | 43233 |
| CDS | 38488 | 38623 |
| CDS | 39390 | 39634 |
| CDS | 39735 | 39947 |
| CDS | 40067 | 40246 |
| CDS | 40871 | 40995 |
| CDS | 41333 | 41504 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03469.13 | XH | 174 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.