PH01002124G0110's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G27230 : 3.00E-81
Blast annotation: transcription factor-related
2.Location
Scaffold: PH01002124
Strand: -
| Region | Start | End |
| gene | 69059 | 77269 |
| mRNA | 69059 | 77269 |
| exon | 69059 | 70054 |
| exon | 70254 | 70379 |
| exon | 70471 | 70611 |
| exon | 70746 | 70847 |
| exon | 70979 | 72709 |
| exon | 73093 | 73152 |
| exon | 73233 | 73274 |
| exon | 73752 | 73833 |
| exon | 73935 | 74081 |
| exon | 74696 | 77269 |
| CDS | 69893 | 70054 |
| CDS | 70254 | 70379 |
| CDS | 70471 | 70611 |
| CDS | 70746 | 70847 |
| CDS | 70979 | 72709 |
| CDS | 73093 | 73152 |
| CDS | 73233 | 73274 |
| CDS | 73752 | 73833 |
| CDS | 73935 | 74081 |
| CDS | 74696 | 74790 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000544 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14215.5 | bHLH-MYC_N | 6 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.