PH01002127G0260's details annotation
1.Annotation
ICBR annotation: OsMADS3 - MADS-box family gene with MIKCc type-box, expressed
Blast result AT4G18960 : 1.40E-79
Blast annotation: K-box region and MADS-box transcription factor family protein
2.Location
Scaffold: PH01002127
Strand: -
| Region | Start | End |
| gene | 173109 | 184410 |
| mRNA | 173109 | 184410 |
| exon | 173109 | 174064 |
| exon | 174311 | 174483 |
| exon | 174591 | 174632 |
| exon | 174717 | 174758 |
| exon | 175328 | 175427 |
| exon | 175557 | 175618 |
| exon | 176733 | 176814 |
| exon | 181451 | 181713 |
| exon | 183851 | 184410 |
| CDS | 174061 | 174064 |
| CDS | 174311 | 174483 |
| CDS | 174591 | 174632 |
| CDS | 174717 | 174758 |
| CDS | 175328 | 175427 |
| CDS | 175557 | 175618 |
| CDS | 176733 | 176814 |
| CDS | 181451 | 181713 |
| CDS | 183851 | 183880 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MADS-MIKC |
| Transcription_Regulator(from PlantTFDB) | MIKC_MADS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00319.17 | SRF-TF | 47 | 94 |
| PF01486.16 | K-box | 123 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.