PH01002166G0240's details annotation
1.Annotation
ICBR annotation: heat shock protein STI, putative, expressed
Blast result AT4G12400 : 9.80E-67
Blast annotation: stress-inducible protein, putative
2.Location
Scaffold: PH01002166
Strand: -
| Region | Start | End |
| gene | 187594 | 191815 |
| mRNA | 187594 | 191815 |
| exon | 187594 | 188098 |
| exon | 189102 | 189185 |
| exon | 189283 | 189342 |
| exon | 189430 | 189496 |
| exon | 189588 | 189811 |
| exon | 191010 | 191815 |
| CDS | 187691 | 188098 |
| CDS | 189102 | 189185 |
| CDS | 189283 | 189342 |
| CDS | 189430 | 189496 |
| CDS | 189588 | 189811 |
| CDS | 191010 | 191096 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03759.12 | PRONE | 253 | 291 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005089 | Rho guanyl-nucleotide exchange factor activity |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.