Annotation of co-expression genes

PH01002173G0310's details annotation

1.Annotation

ICBR annotation: alpha-N-acetylglucosaminidase, putative, expressed

Blast result AT5G13690 : 1.60E-64
Blast annotation: alpha-N-acetylglucosaminidase family / NAGLU family

2.Location

Scaffold: PH01002173
Strand: -

RegionStartEnd
gene215587220987
mRNA215587220987
exon215587217118
exon218569218690
exon219211219461
exon219799219875
exon219970220987
CDS216312217118
CDS218569218690
CDS219211219461
CDS219799219875
CDS219970220185

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000711GH35 Glycoside_Hydrolases
Jumonji Transcription_Regulator(from iTAK)
Valine,_leucine_and_isoleucine_biosynthesis
Glycosphingolipid_biosynthesis_-_ganglio_series
Other_glycan_degradation
Glycosaminoglycan_degradation
ketol-acid reductoisomerase activity,
coproporphyrinogen oxidase activity,
beta-galactosidase activity,
Sphingolipid_metabolism
Pantothenate_and_CoA_biosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12971.6NAGLU_N49156
PF05089.11NAGLU173223
PF03732.16Retrotrans_gag332420

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.