PH01002174G0080's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT3G25800 : 3.20E-94
Blast annotation: protein phosphatase 2A subunit A2
2.Location
Scaffold: PH01002174
Strand: -
| Region | Start | End |
| gene | 53373 | 57654 |
| mRNA | 53373 | 57654 |
| exon | 53373 | 53654 |
| exon | 54073 | 54137 |
| exon | 54233 | 54299 |
| exon | 54375 | 54514 |
| exon | 55162 | 55254 |
| exon | 55448 | 55630 |
| exon | 55966 | 56148 |
| exon | 56435 | 56476 |
| exon | 56880 | 57654 |
| CDS | 53561 | 53654 |
| CDS | 54073 | 54137 |
| CDS | 54233 | 54299 |
| CDS | 54375 | 54514 |
| CDS | 55162 | 55254 |
| CDS | 55448 | 55630 |
| CDS | 55966 | 56148 |
| CDS | 56435 | 56476 |
| CDS | 56880 | 56933 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001477 | BES1 Transcription_Regulator(from PlantTFDB) Trihelix Transcription_Regulator(from PlantTFDB) beta-amylase activity, binding, cellular amino acid biosynthetic process, polysaccharide catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.