PH01002183G0260's details annotation
1.Annotation
ICBR annotation: pyridoxal-dependent decarboxylase protein, putative, expressed
Blast result AT5G11880 : 2.00E-157
Blast annotation: Pyridoxal-dependent decarboxylase family protein
2.Location
Scaffold: PH01002183
Strand: -
| Region | Start | End |
| gene | 197950 | 208607 |
| mRNA | 197950 | 208607 |
| exon | 197950 | 198877 |
| exon | 198987 | 199324 |
| exon | 200400 | 200472 |
| exon | 200685 | 200774 |
| exon | 200889 | 201008 |
| exon | 201347 | 201532 |
| exon | 201672 | 201833 |
| exon | 203043 | 203192 |
| exon | 203661 | 203835 |
| exon | 204964 | 204976 |
| exon | 205667 | 205741 |
| exon | 206231 | 208607 |
| CDS | 198848 | 198877 |
| CDS | 198987 | 199324 |
| CDS | 200400 | 200472 |
| CDS | 200685 | 200774 |
| CDS | 200889 | 201008 |
| CDS | 201347 | 201532 |
| CDS | 201672 | 201833 |
| CDS | 203043 | 203192 |
| CDS | 203661 | 203835 |
| CDS | 204964 | 204976 |
| CDS | 205667 | 205741 |
| CDS | 206231 | 206867 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 1 | 25 |
| PF13041.5 | PPR_2 | 63 | 110 |
| PF13041.5 | PPR_2 | 130 | 178 |
| PF02784.15 | Orn_Arg_deC_N | 241 | 426 |
| PF00278.21 | Orn_DAP_Arg_deC | 427 | 516 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine biosynthesis | diaminopimelate decarboxylase [EC:4.1.1.20] | ko00300 | K01586 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008836 | diaminopimelate decarboxylase activity |
| GO:0009089 | lysine biosynthetic process via diaminopimelate |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.