PH01002190G0130's details annotation
1.Annotation
ICBR annotation: Protein kinase domain containing protein, expressed
Blast result AT5G38280 : 7.70E-74
Blast annotation: PR5-like receptor kinase
2.Location
Scaffold: PH01002190
Strand: -
| Region | Start | End |
| gene | 96694 | 100221 |
| mRNA | 96694 | 100221 |
| exon | 96694 | 98181 |
| exon | 98454 | 98830 |
| exon | 99632 | 100221 |
| CDS | 97352 | 98181 |
| CDS | 98454 | 98830 |
| CDS | 99632 | 99744 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000265 | RLK-Pelle_LRK10L-2 (from iTAK) Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycine,_serine_and_threonine_metabolism tryptophan biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01657.16 | Stress-antifung | 66 | 138 |
| PF00069.24 | Pkinase | 233 | 435 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.