PH01002194G0210's details annotation
1.Annotation
ICBR annotation: serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Blast result AT4G13930 : 3.90E-94
Blast annotation: serine hydroxymethyltransferase 4
2.Location
Scaffold: PH01002194
Strand: -
| Region | Start | End |
| gene | 183040 | 189066 |
| mRNA | 183040 | 189066 |
| exon | 183040 | 184098 |
| exon | 184988 | 185089 |
| exon | 185158 | 185542 |
| exon | 186871 | 189066 |
| CDS | 183854 | 184098 |
| CDS | 184988 | 185089 |
| CDS | 185158 | 185542 |
| CDS | 186871 | 186876 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00464.18 | SHMT | 4 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004372 | glycine hydroxymethyltransferase activity |
| GO:0006544 | glycine metabolic process |
| GO:0006563 | L-serine metabolic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.