PH01002201G0080's details annotation
1.Annotation
ICBR annotation: thioredoxin, putative, expressed
Blast result AT1G08570 : 1.50E-80
Blast annotation: atypical CYS HIS rich thioredoxin 4
2.Location
Scaffold: PH01002201
Strand: +
| Region | Start | End |
| gene | 39661 | 42136 |
| mRNA | 39661 | 42136 |
| exon | 39661 | 40048 |
| exon | 40354 | 40530 |
| exon | 40615 | 40779 |
| exon | 41408 | 41652 |
| exon | 41755 | 42136 |
| CDS | 39821 | 40048 |
| CDS | 40354 | 40530 |
| CDS | 40615 | 40779 |
| CDS | 41408 | 41652 |
| CDS | 41755 | 41827 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000097 | GT59 GlycosylTransferases mRNA_cleavage_factor_complex Other_types_of_O-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00085.19 | Thioredoxin | 112 | 180 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006662 | glycerol ether metabolic process |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.