PH01002203G0140's details annotation
1.Annotation
ICBR annotation: 26S proteasome non-ATPase regulatory subunit 14, putative, expressed
Blast result AT5G23540 : 8.00E-153
Blast annotation: Mov34/MPN/PAD-1 family protein
2.Location
Scaffold: PH01002203
Strand: +
| Region | Start | End |
| gene | 87213 | 93739 |
| mRNA | 87213 | 93739 |
| exon | 87213 | 89027 |
| exon | 89140 | 89317 |
| exon | 91788 | 91941 |
| exon | 92025 | 92192 |
| exon | 92303 | 93739 |
| CDS | 88901 | 89027 |
| CDS | 89140 | 89317 |
| CDS | 91788 | 91941 |
| CDS | 92025 | 92192 |
| CDS | 92303 | 92494 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000725 | Proteasome ATP synthesis coupled proton transport, protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01398.20 | JAB | 25 | 136 |
| PF13012.5 | MitMem_reg | 171 | 289 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 26S proteasome regulatory subunit N11 | ko03051 | K03030 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.