PH01002204G0220's details annotation
1.Annotation
ICBR annotation: aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
Blast result AT1G48520 : 1.00E-180
Blast annotation: GLU-ADT subunit B
2.Location
Scaffold: PH01002204
Strand: -
| Region | Start | End |
| gene | 162152 | 171550 |
| mRNA | 162152 | 171550 |
| exon | 162152 | 162264 |
| exon | 162300 | 162356 |
| exon | 163012 | 163128 |
| exon | 163486 | 163554 |
| exon | 164051 | 164218 |
| exon | 164545 | 164748 |
| exon | 165687 | 165896 |
| exon | 166359 | 167035 |
| exon | 167425 | 167734 |
| exon | 169803 | 170207 |
| exon | 171014 | 171550 |
| CDS | 162187 | 162264 |
| CDS | 162300 | 162356 |
| CDS | 163012 | 163128 |
| CDS | 163486 | 163554 |
| CDS | 164051 | 164218 |
| CDS | 164545 | 164748 |
| CDS | 165687 | 165896 |
| CDS | 166359 | 167035 |
| CDS | 167425 | 167734 |
| CDS | 169803 | 170207 |
| CDS | 171014 | 171430 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02934.14 | GatB_N | 464 | 672 |
| PF02637.17 | GatB_Yqey | 742 | 859 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016874 | ligase activity |
| GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.