PH01002206G0060's details annotation
1.Annotation
ICBR annotation: autophagy-related protein, putative, expressed
Blast result AT1G62040 : 1.10E-55
Blast annotation: Ubiquitin-like superfamily protein
2.Location
Scaffold: PH01002206
Strand: +
| Region | Start | End |
| gene | 36315 | 39814 |
| mRNA | 36315 | 39814 |
| exon | 36315 | 37209 |
| exon | 38839 | 38894 |
| exon | 38981 | 39033 |
| exon | 39493 | 39611 |
| exon | 39697 | 39814 |
| CDS | 37137 | 37209 |
| CDS | 38839 | 38894 |
| CDS | 38981 | 39033 |
| CDS | 39493 | 39611 |
| CDS | 39697 | 39791 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001553 | seryl-tRNA aminoacylation, serine-tRNA ligase activity, Regulation_of_autophagy tRNA aminoacylation for protein translation, ribonuclease activity, Aminoacyl-tRNA_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02991.15 | Atg8 | 14 | 117 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Regulation of autophagy | GABA(A) receptor-associated protein (autophagy-related protein 8) | K08341 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.