PH01002223G0060's details annotation
1.Annotation
ICBR annotation: peroxisomal membrane protein, putative, expressed
Blast result AT1G52870 : 2.00E-110
Blast annotation: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
2.Location
Scaffold: PH01002223
Strand: +
| Region | Start | End |
| gene | 29104 | 31526 |
| mRNA | 29104 | 31526 |
| exon | 29104 | 29648 |
| exon | 29759 | 29899 |
| exon | 30001 | 30375 |
| exon | 30811 | 30926 |
| exon | 31037 | 31100 |
| exon | 31417 | 31526 |
| CDS | 29556 | 29648 |
| CDS | 29759 | 29899 |
| CDS | 30001 | 30375 |
| CDS | 30811 | 30926 |
| CDS | 31037 | 31100 |
| CDS | 31417 | 31506 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000137 | integral to membrane, transmembrane transport, RLK-Pelle_RLCK-IV (from iTAK) Peroxisome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04117.11 | Mpv17_PMP22 | 180 | 241 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Peroxisome | protein Mpv17 | ko04146 | K13348 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.