Annotation of co-expression genes

PH01002242G0280's details annotation

1.Annotation

ICBR annotation: eukaryotic peptide chain release factor subunit 1-1, putative, expressed

Blast result AT1G12920 : 0.00E+00
Blast annotation: eukaryotic release factor 1-2

2.Location

Scaffold: PH01002242
Strand: -

RegionStartEnd
gene192557195908
mRNA192557195908
exon192557195908
CDS193100194413

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001297PLATZ Transcription_Regulator(from iTAK)
translational termination,
iron-sulfur cluster assembly,
mRNA_surveillance_pathway
coexpression networkCFinderM001443Fatty_acid_biosynthesis
3-oxoacyl-[acyl-carrier-protein] synthase activity,
translational termination,
mRNA_surveillance_pathway
translation release factor activity, codon specific,
lipid biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03463.14eRF1_117138
PF03464.14eRF1_2144278
PF03465.14eRF1_3281417

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
mRNA surveillance pathwaypeptide chain release factor subunit 1ko03015K03265

10.Gene Ontology

GO AccessionGO Annotation
GO:0005737cytoplasm
GO:0006415translational termination
GO:0016149translation release factor activity, codon specific

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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