Annotation of co-expression genes

PH01002270G0040's details annotation

1.Annotation

ICBR annotation: signal peptidase complex subunit 1, putative

Blast result AT4G40042 : 1.50E-29
Blast annotation: Microsomal signal peptidase 12 kDa subunit (SPC12)

2.Location

Scaffold: PH01002270
Strand: -

RegionStartEnd
gene2485326121
mRNA2485326121
exon2485325365
exon2554426121
CDS2507825365
CDS2554425885

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000241signal peptidase complex,
Protein_export
signal peptide processing,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06645.12SPC12115184

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein exportsignal peptidase complex subunit 1 [EC:3.4.-.-]ko03060K12946

10.Gene Ontology

GO AccessionGO Annotation
GO:0005787signal peptidase complex
GO:0006465signal peptide processing
GO:0008233peptidase activity
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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