Gene details

Annotation of co-expression genes

PH01002277G0190's details annotation

1.Annotation

ICBR annotation: hydrolase, NUDIX family, domain containing protein, expressed

Blast result AT3G02780 : 2.00E-113
Blast annotation: isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2

2.Location

Scaffold: PH01002277
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000829	RLK-Pelle_LRR-Xa (from iTAK) alternative_oxidase_activity isopentenyl-diphosphate delta-isomerase activity, Terpenoid_backbone_biosynthesis CAMK_CAMKL-CHK1 (from iTAK)
coexpression network	CFinderM001007	RLK-Pelle_LRR-Xa (from iTAK) Terpenoid_backbone_biosynthesis isopentenyl-diphosphate delta-isomerase activity, coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, transferase activity, transferring phosphorus-containing groups, isoprenoid biosynthetic process,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00293.27	NUDIX	113	261

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Terpenoid backbone biosynthesis	isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2]	ko00900	K01823

10.Gene Ontology

GO Accession	GO Annotation
GO:0004452	isopentenyl-diphosphate delta-isomerase activity
GO:0008299	isoprenoid biosynthetic process
GO:0016787	hydrolase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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