Annotation of co-expression genes

PH01002285G0270's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT2G30490 : 0.00E+00
Blast annotation: cinnamate-4-hydroxylase

2.Location

Scaffold: PH01002285
Strand: +

RegionStartEnd
gene206983211938
mRNA206983211938
exon206983207417
exon207518207957
exon209682209803
exon211127211938
CDS207073207417
CDS207518207957
CDS209682209803
CDS211127211725

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45034488

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phenylalanine metabolismtrans-cinnamate 4-monooxygenase [EC:1.14.13.11]ko00360K00487
Phenylpropanoid biosynthesistrans-cinnamate 4-monooxygenase [EC:1.14.13.11]ko00940K00487
946 Stilbenoid, diarylheptanoid and gingerol biosynthesistrans-cinnamate 4-monooxygenase [EC:1.14.13.11]K00487
Flavonoid biosynthesistrans-cinnamate 4-monooxygenase [EC:1.14.13.11]ko00941K00487

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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