PH01002290G0270's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G04890 : 1.60E-44
Blast annotation: Uncharacterized conserved protein (DUF2358)
2.Location
Scaffold: PH01002290
Strand: +
| Region | Start | End |
| gene | 198869 | 203900 |
| mRNA | 198869 | 203900 |
| exon | 198869 | 199500 |
| exon | 200044 | 200225 |
| exon | 200890 | 200975 |
| exon | 202411 | 202523 |
| exon | 202775 | 202840 |
| exon | 202978 | 203060 |
| exon | 203363 | 203409 |
| exon | 203530 | 203608 |
| exon | 203682 | 203900 |
| CDS | 199323 | 199500 |
| CDS | 200044 | 200225 |
| CDS | 200890 | 200975 |
| CDS | 202411 | 202523 |
| CDS | 202775 | 202840 |
| CDS | 202978 | 203060 |
| CDS | 203363 | 203409 |
| CDS | 203530 | 203608 |
| CDS | 203682 | 203771 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001587 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation nucleoside_diphosphate_phosphorylation branched chain family amino acid metabolic process, CTP biosynthetic process, GTP biosynthetic process, UTP biosynthetic process, nucleoside diphosphate kinase activity, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10184.8 | DUF2358 | 170 | 282 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.