PH01002324G0330's details annotation
1.Annotation
ICBR annotation: nuclear transport factor 2, putative, expressed
Blast result AT5G43960 : 7.80E-69
Blast annotation: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
2.Location
Scaffold: PH01002324
Strand: -
| Region | Start | End |
| gene | 188945 | 194023 |
| mRNA | 188945 | 194023 |
| exon | 188945 | 189530 |
| exon | 189732 | 189807 |
| exon | 190098 | 190163 |
| exon | 190251 | 190369 |
| exon | 190464 | 190656 |
| exon | 190741 | 191027 |
| exon | 192420 | 192717 |
| exon | 193486 | 193626 |
| exon | 193767 | 194023 |
| CDS | 189370 | 189530 |
| CDS | 189732 | 189807 |
| CDS | 190098 | 190163 |
| CDS | 190251 | 190369 |
| CDS | 190464 | 190656 |
| CDS | 190741 | 191027 |
| CDS | 192420 | 192717 |
| CDS | 193486 | 193626 |
| CDS | 193767 | 193796 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02136.19 | NTF2 | 11 | 127 |
| PF00076.21 | RRM_1 | 321 | 389 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.