PH01002325G0280's details annotation
1.Annotation
ICBR annotation: vesicle-fusing ATPase, putative, expressed
Blast result AT4G04910 : 6.00E-43
Blast annotation: AAA-type ATPase family protein
2.Location
Scaffold: PH01002325
Strand: -
| Region | Start | End |
| gene | 224918 | 236941 |
| mRNA | 224918 | 236941 |
| exon | 224918 | 225040 |
| exon | 225072 | 225205 |
| exon | 225576 | 225658 |
| exon | 225744 | 225809 |
| exon | 236303 | 236941 |
| CDS | 225009 | 225040 |
| CDS | 225072 | 225205 |
| CDS | 225576 | 225658 |
| CDS | 225744 | 225809 |
| CDS | 236303 | 236941 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000142 | ZF-HD Transcription_Regulator(from PlantTFDB) methylation, nucleobase-containing compound metabolic process, ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 218 | 274 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.