PH01002334G0180's details annotation
1.Annotation
ICBR annotation: chloride channel protein, putative, expressed
Blast result AT5G49890 : 4.00E-125
Blast annotation: chloride channel C
2.Location
Scaffold: PH01002334
Strand: -
| Region | Start | End |
| gene | 169842 | 173702 |
| mRNA | 169842 | 173702 |
| exon | 169842 | 170350 |
| exon | 171096 | 171153 |
| exon | 171309 | 171431 |
| exon | 172007 | 173005 |
| exon | 173111 | 173221 |
| exon | 173268 | 173702 |
| CDS | 170252 | 170350 |
| CDS | 171096 | 171153 |
| CDS | 171309 | 171431 |
| CDS | 172007 | 173005 |
| CDS | 173111 | 173221 |
| CDS | 173268 | 173287 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00654.19 | Voltage_CLC | 8 | 237 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005216 | ion channel activity |
| GO:0005247 | voltage-gated chloride channel activity |
| GO:0005515 | protein binding |
| GO:0006821 | chloride transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.