Annotation of co-expression genes

PH01002335G0310's details annotation

1.Annotation

ICBR annotation: actin-depolymerizing factor, putative, expressed

Blast result AT5G59890 : 2.00E-53
Blast annotation: actin depolymerizing factor 4

2.Location

Scaffold: PH01002335
Strand: -

RegionStartEnd
gene202187203581
mRNA202187203581
exon202187202744
exon202831203096
exon203501203581
CDS202594202744
CDS202831203096
CDS203501203506

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001078actin cytoskeleton,
actin_filament_depolymerization
actin binding,
intracellular,
coexpression networkCFinderM001648actin cytoskeleton,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
actin_filament_depolymerization
ATP synthesis coupled proton transport,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
actin binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00241.19Cofilin_ADF14137

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003779actin binding
GO:0005622intracellular
GO:0015629actin cytoskeleton
GO:0030042actin filament depolymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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