PH01002340G0320's details annotation
1.Annotation
ICBR annotation: RCD1, putative, expressed
Blast result AT1G32230 : 1.20E-68
Blast annotation: WWE protein-protein interaction domain protein family
2.Location
Scaffold: PH01002340
Strand: -
| Region | Start | End |
| gene | 205971 | 210514 |
| mRNA | 205971 | 210514 |
| exon | 205971 | 206678 |
| exon | 206862 | 206957 |
| exon | 207048 | 207230 |
| exon | 207400 | 207495 |
| exon | 207586 | 207650 |
| exon | 208252 | 208493 |
| exon | 208777 | 210514 |
| CDS | 206655 | 206678 |
| CDS | 206862 | 206957 |
| CDS | 207048 | 207230 |
| CDS | 207400 | 207495 |
| CDS | 207586 | 207650 |
| CDS | 208252 | 208493 |
| CDS | 208777 | 209888 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001243 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism protein_kinase_binding NAD+ ADP-ribosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12174.7 | RST | 451 | 503 |
| PF12174.7 | RST | 532 | 596 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003950 | NAD+ ADP-ribosyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.