Annotation of co-expression genes

PH01002344G0070's details annotation

1.Annotation

ICBR annotation: myosin-Ie, putative, expressed

Blast result AT5G53310 : 1.60E-57
Blast annotation: myosin heavy chain-related

2.Location

Scaffold: PH01002344
Strand: -

RegionStartEnd
gene3653540439
mRNA3653540439
exon3653538207
exon3848338541
exon3893339251
exon3987540439
CDS3816738207
CDS3848338541
CDS3893339251
CDS3987540196

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001578myosin complex,
protein folding,
motor activity,
coexpression networkCFinderM001794NAK (from iTAK)
vacuolar_proton-transporting_V-type_ATPase,_V0_domain
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
hydrogen ion transmembrane transporter activity,
calcium ion transport,
myosin complex,
calcium:proton_antiporter_activity
motor activity,
cation transmembrane transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06017.12Myosin_TH168237

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003774motor activity
GO:0016459myosin complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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