PH01002356G0280's details annotation
1.Annotation
ICBR annotation: iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed
Blast result AT4G22220 : 3.00E-57
Blast annotation: SufE/NifU family protein
2.Location
Scaffold: PH01002356
Strand: +
| Region | Start | End |
| gene | 227252 | 231616 |
| mRNA | 227252 | 231616 |
| exon | 227252 | 228314 |
| exon | 229684 | 229738 |
| exon | 231233 | 231616 |
| CDS | 227993 | 228314 |
| CDS | 229684 | 229738 |
| CDS | 231233 | 231458 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01592.15 | NifU_N | 36 | 127 |
| PF01592.15 | NifU_N | 137 | 183 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0016226 | iron-sulfur cluster assembly |
| GO:0051536 | iron-sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.