PH01002395G0300's details annotation
1.Annotation
ICBR annotation: OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT3G10410 : 0.00E+00
Blast annotation: SERINE CARBOXYPEPTIDASE-LIKE 49
2.Location
Scaffold: PH01002395
Strand: +
| Region | Start | End |
| gene | 193950 | 198203 |
| mRNA | 193950 | 198203 |
| exon | 193950 | 194956 |
| exon | 195051 | 195219 |
| exon | 195354 | 195473 |
| exon | 195898 | 196041 |
| exon | 196135 | 196285 |
| exon | 196512 | 196558 |
| exon | 196689 | 196947 |
| exon | 197438 | 197571 |
| exon | 197892 | 198203 |
| CDS | 194601 | 194956 |
| CDS | 195051 | 195219 |
| CDS | 195354 | 195473 |
| CDS | 195898 | 196041 |
| CDS | 196135 | 196285 |
| CDS | 196512 | 196558 |
| CDS | 196689 | 196947 |
| CDS | 197438 | 197571 |
| CDS | 197892 | 198020 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000256 | signal recognition particle, proton-transporting two-sector ATPase complex, proton-transporting domain, |
| coexpression network | CFinderM001650 | sphingolipid metabolic process, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, glucosylceramidase activity, Butanoate_metabolism Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis serine-type carboxypeptidase activity, nucleotidyltransferase activity, |
| coexpression network | CFinderM001679 | PHD Transcription_Regulator(from iTAK) oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism nucleotidyltransferase activity, serine-type carboxypeptidase activity, Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 104 | 499 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.