PH01002400G0020's details annotation
1.Annotation
ICBR annotation: pleckstrin homology domain-containing protein, putative, expressed
Blast result AT2G30880 : 6.60E-88
Blast annotation: Pleckstrin homology (PH) domain-containing protein
2.Location
Scaffold: PH01002400
Strand: -
| Region | Start | End |
| gene | 11981 | 18570 |
| mRNA | 11981 | 18570 |
| exon | 11981 | 13091 |
| exon | 13221 | 13513 |
| exon | 13726 | 13953 |
| exon | 15614 | 15842 |
| exon | 16725 | 16814 |
| exon | 17190 | 17251 |
| exon | 18421 | 18570 |
| CDS | 12779 | 13091 |
| CDS | 13221 | 13513 |
| CDS | 13726 | 13953 |
| CDS | 15614 | 15842 |
| CDS | 16725 | 16814 |
| CDS | 17190 | 17251 |
| CDS | 18421 | 18444 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001461 | HMG Transcription_Regulator(from iTAK) base-excision repair, 4 iron, 4 sulfur cluster binding, endonuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.