Annotation of co-expression genes

PH01002425G0170's details annotation

1.Annotation

ICBR annotation: DNA-directed RNA polymerase I subunit RPA12, putative, expressed

Blast result AT3G25940 : 6.80E-25
Blast annotation: TFIIB zinc-binding protein

2.Location

Scaffold: PH01002425
Strand: +

RegionStartEnd
gene118658121384
mRNA118658121384
exon118658118924
exon119165119205
exon119979120062
exon120159120215
exon120321121384
CDS118807118924
CDS119165119205
CDS119979120062
CDS120159120215
CDS120321120398

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000312proton-transporting V-type ATPase, V0 domain,
phosphatidylinositol phosphorylation,
ATP hydrolysis coupled proton transport,
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
hydrogen ion transmembrane transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01096.17TFIIS_C85121

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismDNA-directed RNA polymerase I subunit RPA12[EC:2.7.7.6]ko00230K03000
Pyrimidine metabolismDNA-directed RNA polymerase I subunit RPA12[EC:2.7.7.6]ko00240K03000
RNA polymeraseDNA-directed RNA polymerase I subunit RPA12[EC:2.7.7.6]ko03020K03000

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003899DNA-directed RNA polymerase activity
GO:0006351transcription, DNA-dependent
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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