Annotation of co-expression genes

PH01002440G0190's details annotation

1.Annotation

ICBR annotation: aspartyl-tRNA synthetase, putative, expressed

Blast result AT4G33760 : 0.00E+00
Blast annotation: tRNA synthetase class II (D, K and N) family protein

2.Location

Scaffold: PH01002440
Strand: +

RegionStartEnd
gene109052119511
mRNA109052119511
exon109052109742
exon110405110545
exon110872110981
exon111873111984
exon113181113272
exon113607113727
exon114079114201
exon114458114653
exon114746114933
exon115122115193
exon115773115871
exon117560117640
exon118435118492
exon118869119511
CDS109359109742
CDS110405110545
CDS110872110981
CDS111873111984
CDS113181113272
CDS113607113727
CDS114079114201
CDS114458114653
CDS114746114933
CDS115122115193
CDS115773115871
CDS117560117640
CDS118435118492
CDS118869119038

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01336.24tRNA_anti-codon100182
PF00152.19tRNA-synt_2207249
PF00152.19tRNA-synt_2250622
PF02938.13GAD374473

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Aminoacyl-tRNA biosynthesisaspartyl-tRNA synthetase [EC:6.1.1.12]ko00970K01876

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006418tRNA aminoacylation for protein translation
GO:0016874ligase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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