PH01002448G0160's details annotation
1.Annotation
ICBR annotation: E2F family transcription factor protein, putative, expressed
Blast result AT2G36010 : 2.00E-93
Blast annotation: E2F transcription factor 3
2.Location
Scaffold: PH01002448
Strand: +
| Region | Start | End |
| gene | 131648 | 138388 |
| mRNA | 131648 | 138388 |
| exon | 131648 | 133770 |
| exon | 134360 | 134540 |
| exon | 134640 | 134696 |
| exon | 135130 | 135215 |
| exon | 135294 | 135382 |
| exon | 135495 | 135546 |
| exon | 135679 | 135731 |
| exon | 135834 | 135884 |
| exon | 135976 | 136024 |
| exon | 136150 | 136215 |
| exon | 136312 | 136388 |
| exon | 136465 | 136693 |
| exon | 137208 | 138388 |
| CDS | 133732 | 133770 |
| CDS | 134360 | 134540 |
| CDS | 134640 | 134696 |
| CDS | 135130 | 135215 |
| CDS | 135294 | 135382 |
| CDS | 135495 | 135546 |
| CDS | 135679 | 135731 |
| CDS | 135834 | 135884 |
| CDS | 135976 | 136024 |
| CDS | 136150 | 136215 |
| CDS | 136312 | 136388 |
| CDS | 136465 | 136693 |
| CDS | 137208 | 137369 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | E2F-DP |
| Transcription_Regulator(from PlantTFDB) | E2F/DP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02319.19 | E2F_TDP | 89 | 152 |
| PF16421.4 | E2F_CC-MB | 167 | 266 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005667 | transcription factor complex |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.