PH01002495G0110's details annotation
1.Annotation
ICBR annotation: OsFBX154 - F-box domain containing protein, expressed
Blast result AT3G49400 : 9.10E-08
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01002495
Strand: +
| Region | Start | End |
| gene | 72869 | 86847 |
| mRNA | 72869 | 86847 |
| exon | 72869 | 74968 |
| exon | 77400 | 77488 |
| exon | 80271 | 80357 |
| exon | 80555 | 80578 |
| exon | 81399 | 81536 |
| exon | 81892 | 82046 |
| exon | 83088 | 83172 |
| exon | 83378 | 83405 |
| exon | 83508 | 83605 |
| exon | 83792 | 84048 |
| exon | 85588 | 86847 |
| CDS | 74896 | 74968 |
| CDS | 77400 | 77488 |
| CDS | 80271 | 80357 |
| CDS | 80555 | 80578 |
| CDS | 81399 | 81536 |
| CDS | 81892 | 82046 |
| CDS | 83088 | 83172 |
| CDS | 83378 | 83405 |
| CDS | 83508 | 83605 |
| CDS | 83792 | 84048 |
| CDS | 85588 | 86128 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.