PH01002495G0180's details annotation
1.Annotation
ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed
Blast result AT1G65410 : 9.00E-105
Blast annotation: non-intrinsic ABC protein 11
2.Location
Scaffold: PH01002495
Strand: +
| Region | Start | End |
| gene | 119277 | 122936 |
| mRNA | 119277 | 122936 |
| exon | 119277 | 119584 |
| exon | 120152 | 120248 |
| exon | 120352 | 120480 |
| exon | 120888 | 120983 |
| exon | 121283 | 121344 |
| exon | 121436 | 121511 |
| exon | 121890 | 121997 |
| exon | 122149 | 122324 |
| exon | 122415 | 122499 |
| exon | 122540 | 122936 |
| CDS | 119469 | 119584 |
| CDS | 120152 | 120248 |
| CDS | 120352 | 120480 |
| CDS | 120888 | 120983 |
| CDS | 121283 | 121344 |
| CDS | 121436 | 121511 |
| CDS | 121890 | 121997 |
| CDS | 122149 | 122324 |
| CDS | 122415 | 122499 |
| CDS | 122540 | 122554 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00005.26 | ABC_tran | 108 | 237 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0016887 | ATPase activity |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.