Annotation of co-expression genes

PH01002500G0170's details annotation

1.Annotation

ICBR annotation: FAD-linked oxidoreductase protein, putative, expressed

Blast result AT3G19820 : 0.00E+00
Blast annotation: cell elongation protein / DWARF1 / DIMINUTO (DIM)

2.Location

Scaffold: PH01002500
Strand: -

RegionStartEnd
gene114478119465
mRNA114478119465
exon114478115411
exon115681119465
CDS114968115411
CDS115681116922

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01565.22FAD_binding_4109199

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Steroid biosynthesisdelta24-sterol reductase [EC:1.3.1.72]ko00100K09828

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008762UDP-N-acetylmuramate dehydrogenase activity
GO:0016491oxidoreductase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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