Annotation of co-expression genes

PH01002508G0120's details annotation

1.Annotation

ICBR annotation: receptor-like kinase, putative, expressed

Blast result AT5G16000 : 2.00E-56
Blast annotation: NSP-interacting kinase 1

2.Location

Scaffold: PH01002508
Strand: -

RegionStartEnd
gene7286176038
mRNA7286176038
exon7286173129
exon7316873263
exon7355973744
exon7408374128
exon7449874557
exon7464274713
exon7480374946
exon7505975130
exon7525675388
exon7565876038
CDS7294473129
CDS7316873263
CDS7355973744
CDS7408374128
CDS7449874557
CDS7464274713
CDS7480374946
CDS7505975130
CDS7525675388
CDS7565875757

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23170
PF07714.16Pkinase_Tyr213248

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.