Annotation of co-expression genes

PH01002517G0190's details annotation

1.Annotation

ICBR annotation: mannose-6-phosphate isomerase, putative, expressed

Blast result AT1G67070 : 1.60E-94
Blast annotation: Mannose-6-phosphate isomerase, type I

2.Location

Scaffold: PH01002517
Strand: +

RegionStartEnd
gene8295294372
mRNA8295294372
exon8295283260
exon8343483601
exon8467984750
exon8480685018
exon8638786653
exon8706387359
exon8874489019
exon8914289202
exon9074090876
exon9126991351
exon9140991739
exon9334994372
CDS8301583260
CDS8343483601
CDS8467984750
CDS8480685018
CDS8638786653
CDS8706387359
CDS8874489019
CDS8914289202
CDS9074090876
CDS9126991351
CDS9140991739
CDS9334993573

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01238.20PMI_typeI83140
PF01238.20PMI_typeI163383

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004129cytochrome-c oxidase activity
GO:0004476mannose-6-phosphate isomerase activity
GO:0005746mitochondrial respiratory chain
GO:0005975carbohydrate metabolic process
GO:0008270zinc ion binding
GO:0009055electron carrier activity
GO:0009298GDP-mannose biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.