PH01002540G0050's details annotation
1.Annotation
ICBR annotation: PSF2 - Putative GINS complex subunit, expressed
Blast result AT3G12530 : 3.90E-41
Blast annotation: PSF2
2.Location
Scaffold: PH01002540
Strand: -
| Region | Start | End |
| gene | 35990 | 45297 |
| mRNA | 35990 | 45297 |
| exon | 35990 | 37195 |
| exon | 38953 | 38969 |
| exon | 39432 | 39584 |
| exon | 40104 | 40196 |
| exon | 40294 | 40324 |
| exon | 40406 | 40549 |
| exon | 42798 | 45297 |
| CDS | 37099 | 37195 |
| CDS | 38953 | 38969 |
| CDS | 39432 | 39584 |
| CDS | 40104 | 40196 |
| CDS | 40294 | 40324 |
| CDS | 40406 | 40549 |
| CDS | 42798 | 43138 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05916.10 | Sld5 | 129 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006260 | DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.