PH01002549G0190's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolases family 17, putative, expressed
Blast result AT4G16260 : 4.10E-81
Blast annotation: Glycosyl hydrolase superfamily protein
2.Location
Scaffold: PH01002549
Strand: -
| Region | Start | End |
| gene | 125192 | 126491 |
| mRNA | 125192 | 126491 |
| exon | 125192 | 126220 |
| exon | 126405 | 126491 |
| CDS | 125295 | 126220 |
| CDS | 126405 | 126411 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000159 | chitin binding, chitin catabolic process, cell wall macromolecule catabolic process, chitinase activity, ATP binding, ATPase activity, SNARE_interactions_in_vesicular_transport carbohydrate metabolic process, protein phosphorylation, transport, transmembrane transport, RLK-Pelle_LRR-VIII-1 (from iTAK) RLK-Pelle_LRK10L-2 (from iTAK) |
| coexpression network | CFinderM000160 | RLK-Pelle_LRK10L-2 (from iTAK) SNARE_interactions_in_vesicular_transport transport, cell wall macromolecule catabolic process, chitin catabolic process, transmembrane transport, |
| coexpression network | CFinderM000199 | RLK-Pelle_LRR-VIII-1 (from iTAK) |
| coexpression network | CFinderM000286 | chitin binding, chitin catabolic process, cell wall macromolecule catabolic process, chitinase activity, Amino_sugar_and_nucleotide_sugar_metabolism carbohydrate metabolic process, |
| coexpression network | CFinderM000412 | chitin binding, cell wall macromolecule catabolic process, chitin catabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00332.17 | Glyco_hydro_17 | 6 | 308 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.