PH01002564G0030's details annotation
1.Annotation
ICBR annotation: pyridoxamine 5'-phosphate oxidase family protein, putative, expressed
Blast result AT3G03890 : 8.90E-56
Blast annotation: FMN binding
2.Location
Scaffold: PH01002564
Strand: +
| Region | Start | End |
| gene | 19355 | 23360 |
| mRNA | 19355 | 23360 |
| exon | 19355 | 19885 |
| exon | 20020 | 20133 |
| exon | 20747 | 20833 |
| exon | 21380 | 21478 |
| exon | 22222 | 22287 |
| exon | 22380 | 22470 |
| exon | 22728 | 22795 |
| exon | 22913 | 22982 |
| exon | 23261 | 23360 |
| CDS | 19649 | 19885 |
| CDS | 20020 | 20133 |
| CDS | 20747 | 20833 |
| CDS | 21380 | 21478 |
| CDS | 22222 | 22287 |
| CDS | 22380 | 22470 |
| CDS | 22728 | 22795 |
| CDS | 22913 | 22982 |
| CDS | 23261 | 23343 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10615.8 | DUF2470 | 252 | 283 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0010181 | FMN binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.