PH01002573G0200's details annotation
1.Annotation
ICBR annotation: phosphatidylinositol transfer, putative, expressed
Blast result AT2G21540 : 4.00E-159
Blast annotation: SEC14-like 3
2.Location
Scaffold: PH01002573
Strand: -
| Region | Start | End |
| gene | 148923 | 154607 |
| mRNA | 148923 | 154607 |
| exon | 148923 | 149256 |
| exon | 149552 | 149626 |
| exon | 149814 | 150190 |
| exon | 150291 | 150396 |
| exon | 150852 | 150989 |
| exon | 151101 | 151199 |
| exon | 151312 | 151405 |
| exon | 151518 | 151567 |
| exon | 151666 | 151767 |
| exon | 151872 | 151949 |
| exon | 152032 | 152298 |
| exon | 152420 | 152519 |
| exon | 152604 | 152883 |
| exon | 153125 | 154607 |
| CDS | 149239 | 149256 |
| CDS | 149552 | 149626 |
| CDS | 149814 | 150190 |
| CDS | 150291 | 150396 |
| CDS | 150852 | 150989 |
| CDS | 151101 | 151199 |
| CDS | 151312 | 151405 |
| CDS | 151518 | 151567 |
| CDS | 151666 | 151767 |
| CDS | 151872 | 151949 |
| CDS | 152032 | 152298 |
| CDS | 152420 | 152519 |
| CDS | 152604 | 152883 |
| CDS | 153125 | 153170 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03765.14 | CRAL_TRIO_N | 101 | 127 |
| PF00650.19 | CRAL_TRIO | 152 | 317 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.