PH01002592G0270's details annotation
1.Annotation
ICBR annotation: respiratory burst oxidase, putative, expressed
Blast result AT1G64060 : 0.00E+00
Blast annotation: respiratory burst oxidase protein F
2.Location
Scaffold: PH01002592
Strand: -
| Region | Start | End |
| gene | 132732 | 144057 |
| mRNA | 132732 | 144057 |
| exon | 132732 | 133825 |
| exon | 134177 | 134255 |
| exon | 134429 | 134557 |
| exon | 134672 | 134869 |
| exon | 135001 | 135160 |
| exon | 135246 | 135413 |
| exon | 135568 | 135683 |
| exon | 135759 | 135854 |
| exon | 135941 | 136324 |
| exon | 136965 | 137387 |
| exon | 140370 | 140483 |
| exon | 141286 | 141334 |
| exon | 141460 | 141619 |
| exon | 141720 | 141783 |
| exon | 142314 | 144057 |
| CDS | 133716 | 133825 |
| CDS | 134177 | 134255 |
| CDS | 134429 | 134557 |
| CDS | 134672 | 134869 |
| CDS | 135001 | 135160 |
| CDS | 135246 | 135413 |
| CDS | 135568 | 135683 |
| CDS | 135759 | 135854 |
| CDS | 135941 | 136324 |
| CDS | 136965 | 137387 |
| CDS | 140370 | 140483 |
| CDS | 141286 | 141334 |
| CDS | 141460 | 141619 |
| CDS | 141720 | 141783 |
| CDS | 142314 | 142370 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08414.9 | NADPH_Ox | 18 | 86 |
| PF01794.18 | Ferric_reduct | 246 | 401 |
| PF08022.11 | FAD_binding_8 | 443 | 557 |
| PF08030.11 | NAD_binding_6 | 564 | 750 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
| GO:0016491 | oxidoreductase activity |
| GO:0050664 | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.