PH01002603G0170's details annotation
1.Annotation
ICBR annotation: EMB1379, putative, expressed
Blast result AT5G21140 : 1.80E-84
Blast annotation: embryo defective 1379
2.Location
Scaffold: PH01002603
Strand: -
| Region | Start | End |
| gene | 118728 | 122206 |
| mRNA | 118728 | 122206 |
| exon | 118728 | 119595 |
| exon | 119681 | 119758 |
| exon | 119873 | 120106 |
| exon | 120619 | 120699 |
| exon | 120795 | 120991 |
| exon | 121757 | 122206 |
| CDS | 119371 | 119595 |
| CDS | 119681 | 119758 |
| CDS | 119873 | 120106 |
| CDS | 120619 | 120699 |
| CDS | 120795 | 120991 |
| CDS | 121757 | 121874 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07574.12 | SMC_Nse1 | 8 | 189 |
| PF08746.10 | zf-RING-like | 201 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006281 | DNA repair |
| GO:0030915 | Smc5-Smc6 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.